Publications

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Journal Article
C. Lanny Winata, Dodzian, J., and Bialek-Wyrzykowska, U., The zebrafish as a model for developmental and biomedical research in Poland and beyond., Dev Biol, vol. 457, no. 2, pp. 167-168, 2020.
C. L. Winata, Korzh, S., Kondrychyn, I., Korzh, V., and Gong, Z., The role of vasculature and blood circulation in zebrafish swimbladder development., BMC Dev Biol, vol. 10, p. 3, 2010.
R. Minhas, Paterek, A., Łapiński, M., Bazała, M., Korzh, V., and Winata, C. L., A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression., Dev Dyn, vol. 248, no. 9, pp. 837-849, 2019.
S. Korzh, Winata, C. Lanni, Zheng, W., Yang, S., Yin, A., Ingham, P., Korzh, V., and Gong, Z., The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development., Dev Biol, vol. 359, no. 2, pp. 262-76, 2011.
H. Aanes, Winata, C. L., Lin, C. Ho, Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. Shreen, Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S., Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition., Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.
A. Yin, Korzh, S., Winata, C. L., Korzh, V., and Gong, Z., Wnt signaling is required for early development of zebrafish swimbladder., PLoS One, vol. 6, no. 3, p. e18431, 2011.
R. Minhas, Loeffler-Wirth, H., Siddiqui, Y. H., Obrębski, T., Vashisht, S., Nahia, K. Abu, Paterek, A., Brzozowska, A., Bugajski, L., Piwocka, K., Korzh, V., Binder, H., and Winata, C. Lanny, Transcriptome profile of the sinoatrial ring reveals conserved and novel genetic programs of the zebrafish pacemaker., BMC Genomics, vol. 22, no. 1, p. 715, 2021.
S. Hong Lam, Winata, C. L., Tong, Y., Korzh, S., San Lim, W., Korzh, V., Spitsbergen, J., Mathavan, S., Miller, L. D., Liu, E. T., and Gong, Z., Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver., Physiol Genomics, vol. 27, no. 3, pp. 351-61, 2006.
S. Korzh, Pan, X., Garcia-Lecea, M., Winata, C. L., Pan, X., Wohland, T., Korzh, V., and Gong, Z., Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish., BMC Dev Biol, vol. 8, p. 84, 2008.
B. Uszczynska-Ratajczak, Sugunan, S., Kwiatkowska, M., Migdal, M., Carbonell-Sala, S., Sokol, A., Winata, C. L., and Chacinska, A., Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish., Life Sci Alliance, vol. 6, no. 1, 2023.
L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., Prepatterning of developmental gene expression by modified histones before zygotic genome activation., Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.
H. Aanes, Winata, C. L., Moen, L. F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P., Normalization of RNA-sequencing data from samples with varying mRNA levels., PLoS One, vol. 9, no. 2, p. e89158, 2014.
M. Migdał, Tralle, E., Nahia, K. Abu, Bugajski, Ł., Kędzierska, K. Zofia, Garbicz, F., Piwocka, K., Winata, C. Lanny, and Pawlak, M., Multi-omics analyses of early liver injury reveals cell-type-specific transcriptional and epigenomic shift., BMC Genomics, vol. 22, no. 1, p. 904, 2021.
D. Baranasic, Hörtenhuber, M., Balwierz, P. J., Zehnder, T., Mukarram, A. Kadir, Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., Wragg, J., D'Orazio, F. M., Relic, D., Pachkov, M., Díaz, N., Hernández-Rodríguez, B., Chen, Z., Stoiber, M., Dong, M., Stevens, I., Ross, S. E., Eagle, A., Martin, R., Obasaju, O., Rastegar, S., McGarvey, A. C., Kopp, W., Chambers, E., Wang, D., Kim, H. R., Acemel, R. D., Naranjo, S., Łapiński, M., Chong, V., Mathavan, S., Peers, B., Sauka-Spengler, T., Vingron, M., Carninci, P., Ohler, U., Lacadie, S. Allen, Burgess, S. M., Winata, C., van Eeden, F., Vaquerizas, J. M., Gómez-Skarmeta, J. Luis, Onichtchouk, D., Brown, B. James, Bogdanovic, O., van Nimwegen, E., Westerfield, M., Wardle, F. C., Daub, C. O., Lenhard, B., and Müller, F., Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements., Nat Genet, vol. 54, no. 7, pp. 1037-1050, 2022.
C. Yong Ung, Lam, S. Hong, Hlaing, M. Myintzu, Winata, C. L., Korzh, S., Mathavan, S., and Gong, Z., Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation., BMC Genomics, vol. 11, p. 212, 2010.
K. Hana Utami, Winata, C. L., Hillmer, A. M., Aksoy, I., Long, H. Truong, Liany, H., G Y Chew, E., Mathavan, S., Tay, S. K. H., Korzh, V., Sarda, P., Davila, S., and Cacheux, V., Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency., Hum Mutat, vol. 35, no. 11, pp. 1311-20, 2014.
K. Abu Nahia, Migdał, M., T Quinn, A., Poon, K. - L., Łapiński, M., Sulej, A., Liu, J., Mondal, S. S., Pawlak, M., Bugajski, Ł., Piwocka, K., Brand, T., Kohl, P., Korzh, V., and Winata, C., Genomic and physiological analyses of the zebrafish atrioventricular canal reveal molecular building blocks of the secondary pacemaker region., Cell Mol Life Sci, vol. 78, no. 19-20, pp. 6669-6687, 2021.
C. Parisi, Vashisht, S., and Winata, C. Lanny, Fish-Ing for Enhancers in the Heart., Int J Mol Sci, vol. 22, no. 8, 2021.
C. Lanny Winata, Łapiński, M., Ismail, H., Mathavan, S., and Sampath, P., Exploring Translational Control of Maternal mRNAs in Zebrafish., Methods Mol Biol, vol. 2218, pp. 367-380, 2021.
M. Pawlak, Kedzierska, K. Z., Migdal, M., Nahia, K. Abu, Ramilowski, J. A., Bugajski, L., Hashimoto, K., Marconi, A., Piwocka, K., Carninci, P., and Winata, C. L., Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development., Genome Res, vol. 29, no. 3, pp. 506-519, 2019.
C. L. Winata, Korzh, S., Kondrychyn, I., Zheng, W., Korzh, V., and Gong, Z., Development of zebrafish swimbladder: The requirement of Hedgehog signaling in specification and organization of the three tissue layers., Dev Biol, vol. 331, no. 2, pp. 222-36, 2009.
L. C. Lindeman, Winata, C. L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P., Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos., Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.
K. Niescierowicz, Pryszcz, L., Navarrete, C., Tralle, E., Sulej, A., Nahia, K. Abu, Kasprzyk, M. Elżbieta, Misztal, K., Pateria, A., Pakuła, A., Bochtler, M., and Winata, C., Adar-mediated A-to-I editing is required for embryonic patterning and innate immune response regulation in zebrafish., Nat Commun, vol. 13, no. 1, p. 5520, 2022.