Publications

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Journal Article
V. V. Balatskyi, Vaskivskyi, V. O., Myronova, A., Avramets, D., Nahia, K. Abu, Macewicz, L. L., Ruban, T. P., Kucherenko, D. 'yaYu, Soldatkin, O. O., Lushnikova, I. V., Skibo, G. G., Winata, C. L., Dobrzyn, P., and Piven, O. O., Cardiac-specific β-catenin deletion dysregulates energetic metabolism and mitochondrial function in perinatal cardiomyocytes., Mitochondrion, vol. 60, pp. 59-69, 2021.
L. C. Lindeman, Winata, C. L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P., Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos., Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.
L. C. Lindeman, Winata, C. L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P., Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos., Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.
K. Hana Utami, Winata, C. L., Hillmer, A. M., Aksoy, I., Long, H. Truong, Liany, H., G Y Chew, E., Mathavan, S., Tay, S. K. H., Korzh, V., Sarda, P., Davila, S., and Cacheux, V., Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency., Hum Mutat, vol. 35, no. 11, pp. 1311-20, 2014.
D. Baranasic, Hörtenhuber, M., Balwierz, P. J., Zehnder, T., Mukarram, A. Kadir, Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., Wragg, J., D'Orazio, F. M., Relic, D., Pachkov, M., Díaz, N., Hernández-Rodríguez, B., Chen, Z., Stoiber, M., Dong, M., Stevens, I., Ross, S. E., Eagle, A., Martin, R., Obasaju, O., Rastegar, S., McGarvey, A. C., Kopp, W., Chambers, E., Wang, D., Kim, H. R., Acemel, R. D., Naranjo, S., Łapiński, M., Chong, V., Mathavan, S., Peers, B., Sauka-Spengler, T., Vingron, M., Carninci, P., Ohler, U., Lacadie, S. Allen, Burgess, S. M., Winata, C., van Eeden, F., Vaquerizas, J. M., Gómez-Skarmeta, J. Luis, Onichtchouk, D., Brown, B. James, Bogdanovic, O., van Nimwegen, E., Westerfield, M., Wardle, F. C., Daub, C. O., Lenhard, B., and Müller, F., Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements., Nat Genet, vol. 54, no. 7, pp. 1037-1050, 2022.
H. Aanes, Winata, C. L., Moen, L. F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P., Normalization of RNA-sequencing data from samples with varying mRNA levels., PLoS One, vol. 9, no. 2, p. e89158, 2014.
H. Aanes, Winata, C. L., Moen, L. F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P., Normalization of RNA-sequencing data from samples with varying mRNA levels., PLoS One, vol. 9, no. 2, p. e89158, 2014.
L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., Prepatterning of developmental gene expression by modified histones before zygotic genome activation., Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.
L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., Prepatterning of developmental gene expression by modified histones before zygotic genome activation., Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.
L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., Prepatterning of developmental gene expression by modified histones before zygotic genome activation., Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.
H. Aanes, Winata, C. L., Lin, C. Ho, Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. Shreen, Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S., Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition., Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.
H. Aanes, Winata, C. L., Lin, C. Ho, Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. Shreen, Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S., Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition., Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.
M. Migdał, Arakawa, T., Takizawa, S., Furuno, M., Suzuki, H., Arner, E., Winata, C. Lanny, and Kaczkowski, B., xcore: an R package for inference of gene expression regulators., BMC Bioinformatics, vol. 24, no. 1, p. 14, 2023.
M. Migdał, Arakawa, T., Takizawa, S., Furuno, M., Suzuki, H., Arner, E., Winata, C. Lanny, and Kaczkowski, B., xcore: an R package for inference of gene expression regulators., BMC Bioinformatics, vol. 24, no. 1, p. 14, 2023.