Publications

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2022

D. Baranasic, Hörtenhuber, M., Balwierz, P. J., Zehnder, T., Mukarram, A. Kadir, Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., Wragg, J., D'Orazio, F. M., Relic, D., Pachkov, M., Díaz, N., Hernández-Rodríguez, B., Chen, Z., Stoiber, M., Dong, M., Stevens, I., Ross, S. E., Eagle, A., Martin, R., Obasaju, O., Rastegar, S., McGarvey, A. C., Kopp, W., Chambers, E., Wang, D., Kim, H. R., Acemel, R. D., Naranjo, S., Łapiński, M., Chong, V., Mathavan, S., Peers, B., Sauka-Spengler, T., Vingron, M., Carninci, P., Ohler, U., Lacadie, S. Allen, Burgess, S. M., Winata, C., van Eeden, F., Vaquerizas, J. M., Gómez-Skarmeta, J. Luis, Onichtchouk, D., Brown, B. James, Bogdanovic, O., van Nimwegen, E., Westerfield, M., Wardle, F. C., Daub, C. O., Lenhard, B., and Müller, F., “Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.”, Nat Genet, vol. 54, no. 7, pp. 1037-1050, 2022.

2021

C. Lanny Winata, Łapiński, M., Ismail, H., Mathavan, S., and Sampath, P., “Exploring Translational Control of Maternal mRNAs in Zebrafish.”, Methods Mol Biol, vol. 2218, pp. 367-380, 2021.

2014

K. Hana Utami, Winata, C. L., Hillmer, A. M., Aksoy, I., Long, H. Truong, Liany, H., G Y Chew, E., Mathavan, S., Tay, S. K. H., Korzh, V., Sarda, P., Davila, S., and Cacheux, V., “Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency.”, Hum Mutat, vol. 35, no. 11, pp. 1311-20, 2014.

H. Aanes, Winata, C. L., Moen, L. F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P., “Normalization of RNA-sequencing data from samples with varying mRNA levels.”, PLoS One, vol. 9, no. 2, p. e89158, 2014.

2011

L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., “Prepatterning of developmental gene expression by modified histones before zygotic genome activation.”, Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.

H. Aanes, Winata, C. L., Lin, C. Ho, Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. Shreen, Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S., “Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.”, Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.

2010

L. C. Lindeman, Winata, C. L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P., “Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.”, Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.

C. Yong Ung, Lam, S. Hong, Hlaing, M. Myintzu, Winata, C. L., Korzh, S., Mathavan, S., and Gong, Z., “Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation.”, BMC Genomics, vol. 11, p. 212, 2010.