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H. Aanes, Winata, C. L., Lin, C. Ho, Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. Shreen, Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S., “Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.”, Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.

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L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., “Prepatterning of developmental gene expression by modified histones before zygotic genome activation.”, Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.

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H. Aanes, Winata, C. L., Moen, L. F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P., “Normalization of RNA-sequencing data from samples with varying mRNA levels.”, PLoS One, vol. 9, no. 2, p. e89158, 2014.

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D. Baranasic, Hörtenhuber, M., Balwierz, P. J., Zehnder, T., Mukarram, A. Kadir, Nepal, C., Várnai, C., Hadzhiev, Y., Jimenez-Gonzalez, A., Li, N., Wragg, J., D'Orazio, F. M., Relic, D., Pachkov, M., Díaz, N., Hernández-Rodríguez, B., Chen, Z., Stoiber, M., Dong, M., Stevens, I., Ross, S. E., Eagle, A., Martin, R., Obasaju, O., Rastegar, S., McGarvey, A. C., Kopp, W., Chambers, E., Wang, D., Kim, H. R., Acemel, R. D., Naranjo, S., Łapiński, M., Chong, V., Mathavan, S., Peers, B., Sauka-Spengler, T., Vingron, M., Carninci, P., Ohler, U., Lacadie, S. Allen, Burgess, S. M., Winata, C., van Eeden, F., Vaquerizas, J. M., Gómez-Skarmeta, J. Luis, Onichtchouk, D., Brown, B. James, Bogdanovic, O., van Nimwegen, E., Westerfield, M., Wardle, F. C., Daub, C. O., Lenhard, B., and Müller, F., “Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.”, Nat Genet, vol. 54, no. 7, pp. 1037-1050, 2022.

C. Yong Ung, Lam, S. Hong, Hlaing, M. Myintzu, Winata, C. L., Korzh, S., Mathavan, S., and Gong, Z., “Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation.”, BMC Genomics, vol. 11, p. 212, 2010.

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K. Hana Utami, Winata, C. L., Hillmer, A. M., Aksoy, I., Long, H. Truong, Liany, H., G Y Chew, E., Mathavan, S., Tay, S. K. H., Korzh, V., Sarda, P., Davila, S., and Cacheux, V., “Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency.”, Hum Mutat, vol. 35, no. 11, pp. 1311-20, 2014.

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C. Lanny Winata, Łapiński, M., Ismail, H., Mathavan, S., and Sampath, P., “Exploring Translational Control of Maternal mRNAs in Zebrafish.”, Methods Mol Biol, vol. 2218, pp. 367-380, 2021.

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L. C. Lindeman, Winata, C. L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P., “Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.”, Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.