Publications

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Journal Article
L. C. Lindeman, Winata, C. L., Aanes, H., Mathavan, S., Alestrom, P., and Collas, P., Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos., Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.
C. L. Winata, Korzh, S., Kondrychyn, I., Zheng, W., Korzh, V., and Gong, Z., Development of zebrafish swimbladder: The requirement of Hedgehog signaling in specification and organization of the three tissue layers., Dev Biol, vol. 331, no. 2, pp. 222-36, 2009.
M. Pawlak, Kedzierska, K. Z., Migdal, M., Nahia, K. Abu, Ramilowski, J. A., Bugajski, L., Hashimoto, K., Marconi, A., Piwocka, K., Carninci, P., and Winata, C. L., Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development., Genome Res, vol. 29, no. 3, pp. 506-519, 2019.
C. Lanny Winata, Łapiński, M., Ismail, H., Mathavan, S., and Sampath, P., Exploring Translational Control of Maternal mRNAs in Zebrafish., Methods Mol Biol, vol. 2218, pp. 367-380, 2021.
C. Parisi, Vashisht, S., and Winata, C. Lanny, Fish-Ing for Enhancers in the Heart., Int J Mol Sci, vol. 22, no. 8, 2021.
K. Abu Nahia, Migdał, M., T Quinn, A., Poon, K. - L., Łapiński, M., Sulej, A., Liu, J., Mondal, S. S., Pawlak, M., Bugajski, Ł., Piwocka, K., Brand, T., Kohl, P., Korzh, V., and Winata, C., Genomic and physiological analyses of the zebrafish atrioventricular canal reveal molecular building blocks of the secondary pacemaker region., Cell Mol Life Sci, vol. 78, no. 19-20, pp. 6669-6687, 2021.
K. Hana Utami, Winata, C. L., Hillmer, A. M., Aksoy, I., Long, H. Truong, Liany, H., G Y Chew, E., Mathavan, S., Tay, S. K. H., Korzh, V., Sarda, P., Davila, S., and Cacheux, V., Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency., Hum Mutat, vol. 35, no. 11, pp. 1311-20, 2014.
C. Yong Ung, Lam, S. Hong, Hlaing, M. Myintzu, Winata, C. L., Korzh, S., Mathavan, S., and Gong, Z., Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation., BMC Genomics, vol. 11, p. 212, 2010.
M. Migdał, Tralle, E., Nahia, K. Abu, Bugajski, Ł., Kędzierska, K. Zofia, Garbicz, F., Piwocka, K., Winata, C. Lanny, and Pawlak, M., Multi-omics analyses of early liver injury reveals cell-type-specific transcriptional and epigenomic shift., BMC Genomics, vol. 22, no. 1, p. 904, 2021.
H. Aanes, Winata, C. L., Moen, L. F., Østrup, O., Mathavan, S., Collas, P., Rognes, T., and Aleström, P., Normalization of RNA-sequencing data from samples with varying mRNA levels., PLoS One, vol. 9, no. 2, p. e89158, 2014.
L. C. Lindeman, Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., and Collas, P., Prepatterning of developmental gene expression by modified histones before zygotic genome activation., Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.
S. Korzh, Pan, X., Garcia-Lecea, M., Winata, C. L., Pan, X., Wohland, T., Korzh, V., and Gong, Z., Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish., BMC Dev Biol, vol. 8, p. 84, 2008.
S. Hong Lam, Winata, C. L., Tong, Y., Korzh, S., San Lim, W., Korzh, V., Spitsbergen, J., Mathavan, S., Miller, L. D., Liu, E. T., and Gong, Z., Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver., Physiol Genomics, vol. 27, no. 3, pp. 351-61, 2006.
R. Minhas, Loeffler-Wirth, H., Siddiqui, Y. H., Obrębski, T., Vashisht, S., Nahia, K. Abu, Paterek, A., Brzozowska, A., Bugajski, L., Piwocka, K., Korzh, V., Binder, H., and Winata, C. Lanny, Transcriptome profile of the sinoatrial ring reveals conserved and novel genetic programs of the zebrafish pacemaker., BMC Genomics, vol. 22, no. 1, p. 715, 2021.
A. Yin, Korzh, S., Winata, C. L., Korzh, V., and Gong, Z., Wnt signaling is required for early development of zebrafish swimbladder., PLoS One, vol. 6, no. 3, p. e18431, 2011.
H. Aanes, Winata, C. L., Lin, C. Ho, Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. Shreen, Collas, P., Bourque, G., Gong, Z., Korzh, V., Aleström, P., and Mathavan, S., Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition., Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.
S. Korzh, Winata, C. Lanni, Zheng, W., Yang, S., Yin, A., Ingham, P., Korzh, V., and Gong, Z., The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development., Dev Biol, vol. 359, no. 2, pp. 262-76, 2011.
R. Minhas, Paterek, A., Łapiński, M., Bazała, M., Korzh, V., and Winata, C. L., A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression., Dev Dyn, vol. 248, no. 9, pp. 837-849, 2019.
C. L. Winata, Korzh, S., Kondrychyn, I., Korzh, V., and Gong, Z., The role of vasculature and blood circulation in zebrafish swimbladder development., BMC Dev Biol, vol. 10, p. 3, 2010.
C. Lanny Winata, Dodzian, J., and Bialek-Wyrzykowska, U., The zebrafish as a model for developmental and biomedical research in Poland and beyond., Dev Biol, vol. 457, no. 2, pp. 167-168, 2020.