Publications
“Normalization of RNA-sequencing data from samples with varying mRNA levels.”, PLoS One, vol. 9, no. 2, p. e89158, 2014.
, “Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.”, Genome Res, vol. 21, no. 8, pp. 1328-38, 2011.
, “Cardiac-specific β-catenin deletion dysregulates energetic metabolism and mitochondrial function in perinatal cardiomyocytes.”, Mitochondrion, vol. 60, pp. 59-69, 2021.
, “Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.”, Nat Genet, vol. 54, no. 7, pp. 1037-1050, 2022.
, “Targeted RNA Knockdown by a Type III CRISPR-Cas Complex in Zebrafish.”, CRISPR J, vol. 3, no. 4, pp. 299-313, 2020.
, “Requirement of vasculogenesis and blood circulation in late stages of liver growth in zebrafish.”, BMC Dev Biol, vol. 8, p. 84, 2008.
, “The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development.”, Dev Biol, vol. 359, no. 2, pp. 262-76, 2011.
, “BAC transgenic zebrafish for transcriptional promoter and enhancer studies.”, Methods Mol Biol, vol. 1227, pp. 245-58, 2015.
, “Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver.”, Physiol Genomics, vol. 27, no. 3, pp. 351-61, 2006.
, “Prepatterning of developmental gene expression by modified histones before zygotic genome activation.”, Dev Cell, vol. 21, no. 6, pp. 993-1004, 2011.
, “Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.”, Int J Dev Biol, vol. 54, no. 5, pp. 803-13, 2010.
, “Multi-omics analyses of early liver injury reveals cell-type-specific transcriptional and epigenomic shift.”, BMC Genomics, vol. 22, no. 1, p. 904, 2021.
, “xcore: an R package for inference of gene expression regulators.”, BMC Bioinformatics, vol. 24, no. 1, p. 14, 2023.
, “A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression.”, Dev Dyn, vol. 248, no. 9, pp. 837-849, 2019.
, “Transcriptome profile of the sinoatrial ring reveals conserved and novel genetic programs of the zebrafish pacemaker.”, BMC Genomics, vol. 22, no. 1, p. 715, 2021.
, “Genomic and physiological analyses of the zebrafish atrioventricular canal reveal molecular building blocks of the secondary pacemaker region.”, Cell Mol Life Sci, vol. 78, no. 19-20, pp. 6669-6687, 2021.
, “Adar-mediated A-to-I editing is required for embryonic patterning and innate immune response regulation in zebrafish.”, Nat Commun, vol. 13, no. 1, p. 5520, 2022.
, “Fish-Ing for Enhancers in the Heart.”, Int J Mol Sci, vol. 22, no. 8, 2021.
, “Decoding the Heart through Next Generation Sequencing Approaches”, Genes (Basel), vol. 9, 2018.
, “Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development.”, Genome Res, vol. 29, no. 3, pp. 506-519, 2019.
, “The canonical way to make a heart: β-catenin and plakoglobin in heart development and remodeling”, Exp. Biol. Med. (Maywood), vol. 242, pp. 1735–1745, 2017.
, “DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish.”, Zebrafish, vol. 13, no. 1, pp. 54-60, 2016.
, “Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation.”, BMC Genomics, vol. 11, p. 212, 2010.
, “Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish.”, Life Sci Alliance, vol. 6, no. 1, 2023.
, “Impaired development of neural-crest cell-derived organs and intellectual disability caused by MED13L haploinsufficiency.”, Hum Mutat, vol. 35, no. 11, pp. 1311-20, 2014.
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